PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18251_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 105aa    MW: 12230.9 Da    PI: 10.6865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18251_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-183382255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r +k +g+WvAeIr+p   +kr r +lg++ ta+ Aa+a++ a  +l+g
  RrC18251_p1 33 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTADAAARAYDTAVFYLRG 82
                 69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-363396IPR001471AP2/ERF domain
PROSITE profilePS5103222.8793390IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-213391IPR016177DNA-binding domain
PfamPF008472.2E-113482IPR001471AP2/ERF domain
CDDcd000181.63E-253492No hitNo description
Gene3DG3DSA:3.30.730.103.0E-313491IPR001471AP2/ERF domain
PRINTSPR003671.5E-93445IPR001471AP2/ERF domain
PRINTSPR003671.5E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEGELQQEPC RRKRRQPPQE KEDTHVATRP LKPYRGIRMR KWGKWVAEIR EPNKRSRLWL  60
GSYTTADAAA RAYDTAVFYL RGPSARLNFP DLLFQEEGQR SAAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-173290463ATERF1
3gcc_A9e-173290463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107439.14e-65PREDICTED: ethylene-responsive transcription factor RAP2-1
RefseqXP_013665937.14e-65PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC303e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLM4DC444e-65M4DC44_BRARP; Uncharacterized protein
STRINGBra014056.1-P1e-64(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.19e-43related to AP2 1